I'm in a very similar situation. I'm extremely unhappy with my program, but I'm too far into it to stop. I went for the non thesis option. I take 3 more classes, and walk out with my degree.
Think about if you really need that thesis. Will the thesis help you out in the future? Or is it just to write a thesis? Obviously you don't need a thesis to get into the new program you are interested in, so why put yourself through all the work?
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Just keep swimming
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